Function reference • opalr

All functions
`dictionary.annotate()`	Set variable annotation with a taxonomy term
`dictionary.annotate.harmo_status()`	Set variable annotation with Harmonization Status term
`dictionary.annotations()`	List the annotations
`dictionary.apply()`	Apply the dictionary to a tibble
`dictionary.inspect()`	Inspect the dictionary of a tibble
`dsadmin.activity()`	Get DataSHIELD activity
`dsadmin.activity_summary()`	Get DataSHIELD activity summary
`dsadmin.get_method()`	Get a DataSHIELD method
`dsadmin.get_methods()`	Get DataSHIELD methods
`dsadmin.get_options()`	Get the DataSHIELD options
`dsadmin.install_github_package()`	Install a DataSHIELD package from GitHub
`dsadmin.install_local_package()`	Install a DataSHIELD package from a local archive file
`dsadmin.install_package()`	Install a DataSHIELD package
`dsadmin.installed_package()`	Check DataSHIELD package
`dsadmin.log()`	Get DataSHIELD logs
`dsadmin.package_description()`	Get DataSHIELD package description
`dsadmin.package_descriptions()`	Get DataSHIELD package descriptions
`dsadmin.perm()`	Get the DataSHIELD permissions
`dsadmin.perm_add()`	Add or update a DataSHIELD permission
`dsadmin.perm_delete()`	Delete a DataSHIELD permission
`dsadmin.profile()`	Get a DataSHIELD profile
`dsadmin.profile_access()`	Restrict or open access to a DataSHIELD profile
`dsadmin.profile_create()`	Create a DataSHIELD profile
`dsadmin.profile_delete()`	Delete a DataSHIELD profile
`dsadmin.profile_enable()`	Enable or disable a DataSHIELD profile
`dsadmin.profile_exists()`	Check a DataSHIELD profile exists
`dsadmin.profile_init()`	Initialize a DataSHIELD profile
`dsadmin.profile_perm()`	Get the permissions of a DataSHIELD profile
`dsadmin.profile_perm_add()`	Add or update a permission on a DataSHIELD profile
`dsadmin.profile_perm_delete()`	Delete a permission from a DataSHIELD profile
`dsadmin.profile_rparser()`	Set or remove the R parser version of a DataSHIELD profile
`dsadmin.profiles()`	Get DataSHIELD profiles
`dsadmin.publish_package()`	Publish DataSHIELD package settings
`dsadmin.remove_package()`	Remove DataSHIELD package
`dsadmin.rm_method()`	Remove DataSHIELD method
`dsadmin.rm_methods()`	Remove DataSHIELD methods.
`dsadmin.rm_option()`	Remove a DataSHIELD option
`dsadmin.rm_options()`	Remove all DataSHIELD options
`dsadmin.rm_package_methods()`	Remove DataSHIELD package methods
`dsadmin.set_method()`	Set DataSHIELD method
`dsadmin.set_option()`	Set DataSHIELD option
`dsadmin.set_package_methods()`	Set DataSHIELD package methods
`dsadmin.unpublish_package()`	Unpublish DataSHIELD package settings
`oadmin.activity()`	Get R activity
`oadmin.activity_summary()`	Get R activity summary
`oadmin.install_bioconductor_package()`	Install a package from Bioconductor
`oadmin.install_cran_package()`	Install a package from CRAN
`oadmin.install_devtools()`	Install devtools package
`oadmin.install_github_package()`	Install a package from GitHub
`oadmin.install_local_package()`	Install a package from a local archive file
`oadmin.install_package()`	Install CRAN package
`oadmin.installed_devtools()`	Check devtools package
`oadmin.installed_package()`	Check package is installed
`oadmin.installed_packages()`	List installed packages
`oadmin.log()`	Get Opal main logs
`oadmin.log_rest()`	Get Opal REST API logs
`oadmin.log_sql()`	Get Opal SQL API logs
`oadmin.package_description()`	Get package description
`oadmin.perm()`	Get the R permissions (deprecated)
`oadmin.perm_add()`	Add or update a R permission (deprecated)
`oadmin.perm_delete()`	Delete a R permission (deprecated)
`oadmin.r_perm()`	Get the R permissions
`oadmin.r_perm_add()`	Add or update a R permission
`oadmin.r_perm_delete()`	Delete a R permission
`oadmin.remove_package()`	Remove package
`oadmin.system_metrics()`	Get system metrics
`oadmin.system_perm()`	Get the System permissions
`oadmin.system_perm_add()`	Add or update a System permission
`oadmin.system_perm_delete()`	Delete a System permission
`oadmin.user_add()`	Add a user
`oadmin.user_delete()`	Delete a user
`oadmin.user_enable()`	Enable a user
`oadmin.user_exists()`	Check user exists
`oadmin.user_profile_delete()`	Delete a user profile
`oadmin.user_profiles()`	Get user profiles
`oadmin.user_reset_password()`	Reset user password
`oadmin.users()`	Get the users
`opal.annotate()`	Apply the annotations to a Opal table
`opal.annotations()`	Get the annotations of a Opal table
`opal.as_md_table()`	Array to Markdown
`opal.assign()`	Data or expression assignment
`opal.assign.data()`	Data assignment
`opal.assign.resource()`	Resource assignment
`opal.assign.script()`	R script assignment
`opal.assign.table()`	Data assignment to a data.frame
`opal.assign.table.tibble()`	Data assignment to a tibble
`opal.attribute_values()`	Get a vector of attribute values
`opal.command()`	Get an asynchronous command
`opal.command_result()`	Get result of an asynchronous command
`opal.command_rm()`	Remove an asynchronous command
`opal.commands()`	List the asynchronous commands
`opal.commands_rm()`	Remove all asynchronous commands
`opal.datasource()`	Get a datasource
`opal.datasources()`	Get datasources
`opal.delete()`	Generic REST resource deletion.
`opal.execute()`	Execute a R script
`opal.execute.source()`	Execute a R file script
`opal.file()`	Get file content
`opal.file_cp()`	Copy a file
`opal.file_download()`	Download a file
`opal.file_ls()`	List content of a folder
`opal.file_mkdir()`	Make a folder
`opal.file_mkdir_tmp()`	Make a temporary folder
`opal.file_mv()`	Move and/or rename a file
`opal.file_read()`	Read a file
`opal.file_rm()`	Remove a file
`opal.file_unzip()`	Unzip a zip archive file
`opal.file_upload()`	Upload a file or a folder
`opal.file_write()`	Write a file
`opal.get()`	Generic REST resource getter.
`opal.load_package()`	Load package
`opal.login()`	Opal login
`opal.logout()`	Logout from Opal(s)
`opal.perms()`	Get the permissions of a subject
`opal.post()`	Generic REST resource creation.
`opal.profiles()`	List R profiles
`opal.project()`	Get a project
`opal.project_backup()`	Backup a project
`opal.project_command()`	Get project task
`opal.project_create()`	Create a project
`opal.project_delete()`	Delete a project
`opal.project_exists()`	Check a project exists
`opal.project_perm()`	Get the permissions on a project
`opal.project_perm_add()`	Add or update a permission on a project
`opal.project_perm_delete()`	Delete a permission from a project
`opal.project_restore()`	Restore a project
`opal.projects()`	Get projects
`opal.projects_databases()`	Get projects databases
`opal.put()`	Generic REST resource update.
`opal.report()`	Opal report
`opal.resource()`	Get a resource reference of a project
`opal.resource_create()`	Create a resource reference in a project
`opal.resource_delete()`	Delete a resource reference
`opal.resource_exists()`	Check a resource reference exists
`opal.resource_extension_create()`	Create an extended resource reference in a project
`opal.resource_get()`	Get the resource object of a project
`opal.resource_perm()`	Get the permissions on a resource
`opal.resource_perm_add()`	Add or update a permission on a resource
`opal.resource_perm_delete()`	Delete a permission from a resource
`opal.resource_view_create()`	Create an Opal view over a resource reference
`opal.resource_view_reconnect()`	Reconnect an Opal view to its underlying resource
`opal.resources()`	Get the resource references of a project
`opal.resources_perm()`	Get the permissions on any resource
`opal.resources_perm_add()`	Add or update a permission on any resource
`opal.resources_perm_delete()`	Delete a permission from any resource
`opal.rm()`	Remove a R symbol (deprecated)
`opal.sql()`	Execute a SQL query on tables
`opal.sql_history()`	SQL query execution history
`opal.symbol_import()`	Import a tibble
`opal.symbol_rm()`	Remove a R symbol
`opal.symbol_save()`	Save a tibble
`opal.symbols()`	List R symbols
`opal.table()`	Get a table of a datasource
`opal.table_create()`	Create an Opal table or view
`opal.table_delete()`	Delete a Opal table
`opal.table_dictionary_get()`	Get the dictionary of a Opal table
`opal.table_dictionary_update()`	Update the dictionary of a Opal table
`opal.table_exists()`	Check a Opal table exists
`opal.table_export()`	Export a table as a file
`opal.table_get()`	Get a Opal table as a tibble
`opal.table_import()`	Import a file as table
`opal.table_perm()`	Get the permissions on a table
`opal.table_perm_add()`	Add or update a permission on a table
`opal.table_perm_delete()`	Delete a permission from a table
`opal.table_save()`	Save a local tibble as a Opal table
`opal.table_truncate()`	Truncate a Opal table
`opal.table_view_create()`	Create an Opal view over tables
`opal.table_view_update()`	Update the table references and the entity filter of an Opal view
`opal.tables()`	Get tables of a datasource
`opal.tables_perm()`	Get the permissions on any table of a project
`opal.tables_perm_add()`	Add or update a permission on any table of a project
`opal.tables_perm_delete()`	Delete a permission from any table of a project
`opal.task()`	Get a task
`opal.task_cancel()`	Cancel a task
`opal.task_wait()`	Wait for a task to complete.
`opal.tasks()`	Get the tasks
`opal.taxonomies()`	Get taxonomies
`opal.taxonomy()`	Get a taxonomy
`opal.taxonomy_delete()`	Delete a taxonomy
`opal.taxonomy_download()`	Download a taxonomy file
`opal.taxonomy_upload()`	Upload a taxonomy file
`opal.terms()`	Get the terms of a vocabulary
`opal.token()`	Get a personal access token
`opal.token_datashield_create()`	Create a personal access token for Datashield usage
`opal.token_delete()`	Delete a personal access token
`opal.token_r_create()`	Create a personal access token for R usage
`opal.token_renew()`	Renew an inactive personal access token
`opal.token_sql_create()`	Create a personal access token for SQL usage
`opal.tokens()`	Get the personal access tokens
`opal.unload_package()`	Unload package
`opal.valueset()`	Get the values of an entity
`opal.variable()`	Get a variable of a table
`opal.variable_summary()`	Get summary statistics of a variable of a table
`opal.variables()`	Get variables of a table
`opal.version_compare()`	Compare
`opal.vocabularies()`	Get the vocabularies of a taxonomy
`opal.vocabulary()`	Get a taxonomy vocabulary
`opal.workspace_restore()`	Restore a R workspace from a opal.
`opal.workspace_rm()`	Remove a R workspace from a opal.
`opal.workspace_save()`	Save the current session in a opal R workspace.
`opal.workspaces()`	Get the R workspaces from a opal.

Reference

All functions