All functions

dictionary.annotate()

Set variable annotation with a taxonomy term

dictionary.annotate.harmo_status()

Set variable annotation with Harmonization Status term

dictionary.annotations()

List the annotations

dictionary.apply()

Apply the dictionary to a tibble

dictionary.inspect()

Inspect the dictionary of a tibble

dsadmin.get_method()

Get a DataSHIELD method

dsadmin.get_methods()

Get DataSHIELD methods

dsadmin.get_options()

Get the DataSHIELD options

dsadmin.install_github_package()

Install a DataSHIELD package from GitHub

dsadmin.install_local_package()

Install a DataSHIELD package from a local archive file

dsadmin.install_package()

Install a DataSHIELD package

dsadmin.installed_package()

Check DataSHIELD package

dsadmin.package_description()

Get DataSHIELD package description

dsadmin.package_descriptions()

Get DataSHIELD package descriptions

dsadmin.perm()

Get the DataSHIELD permissions

dsadmin.perm_add()

Add or update a DataSHIELD permission

dsadmin.perm_delete()

Delete a DataSHIELD permission

dsadmin.profile()

Get a DataSHIELD profile

dsadmin.profile_access()

Restrict or open access to a DataSHIELD profile

dsadmin.profile_create()

Create a DataSHIELD profile

dsadmin.profile_delete()

Delete a DataSHIELD profile

dsadmin.profile_enable()

Enable or disable a DataSHIELD profile

dsadmin.profile_exists()

Check a DataSHIELD profile exists

dsadmin.profile_init()

Initialize a DataSHIELD profile

dsadmin.profile_perm()

Get the permissions of a DataSHIELD profile

dsadmin.profile_perm_add()

Add or update a permission on a DataSHIELD profile

dsadmin.profile_perm_delete()

Delete a permission from a DataSHIELD profile

dsadmin.profile_rparser()

Set or remove the R parser version of a DataSHIELD profile

dsadmin.profiles()

Get DataSHIELD profiles

dsadmin.publish_package()

Publish DataSHIELD package settings

dsadmin.remove_package()

Remove DataSHIELD package

dsadmin.rm_method()

Remove DataSHIELD method

dsadmin.rm_methods()

Remove DataSHIELD methods.

dsadmin.rm_option()

Remove a DataSHIELD option

dsadmin.rm_options()

Remove all DataSHIELD options

dsadmin.rm_package_methods()

Remove DataSHIELD package methods

dsadmin.set_method()

Set DataSHIELD method

dsadmin.set_option()

Set DataSHIELD option

dsadmin.set_package_methods()

Set DataSHIELD package methods

dsadmin.unpublish_package()

Unpublish DataSHIELD package settings

oadmin.install_bioconductor_package()

Install a package from Bioconductor

oadmin.install_cran_package()

Install a package from CRAN

oadmin.install_devtools()

Install devtools package

oadmin.install_github_package()

Install a package from GitHub

oadmin.install_local_package()

Install a package from a local archive file

oadmin.install_package()

Install CRAN package

oadmin.installed_devtools()

Check devtools package

oadmin.installed_package()

Check package is installed

oadmin.installed_packages()

List installed packages

oadmin.package_description()

Get package description

oadmin.perm()

Get the R permissions (deprecated)

oadmin.perm_add()

Add or update a R permission (deprecated)

oadmin.perm_delete()

Delete a R permission (deprecated)

oadmin.r_perm()

Get the R permissions

oadmin.r_perm_add()

Add or update a R permission

oadmin.r_perm_delete()

Delete a R permission

oadmin.remove_package()

Remove package

oadmin.system_metrics()

Get system metrics

oadmin.system_perm()

Get the System permissions

oadmin.system_perm_add()

Add or update a System permission

oadmin.system_perm_delete()

Delete a System permission

oadmin.user_add()

Add a user

oadmin.user_delete()

Delete a user

oadmin.user_enable()

Enable a user

oadmin.user_exists()

Check user exists

oadmin.user_profile_delete()

Delete a user profile

oadmin.user_profiles()

Get user profiles

oadmin.user_reset_password()

Reset user password

oadmin.users()

Get the users

opal.annotate()

Apply the annotations to a Opal table

opal.annotations()

Get the annotations of a Opal table

opal.as_md_table()

Array to Markdown

opal.assign()

Data or expression assignment

opal.assign.data()

Data assignment

opal.assign.resource()

Resource assignment

opal.assign.script()

R script assignment

opal.assign.table()

Data assignment to a data.frame

opal.assign.table.tibble()

Data assignment to a tibble

opal.attribute_values()

Get a vector of values

opal.command()

Get an asynchronous command

opal.command_result()

Get result of an asynchronous command

opal.command_rm()

Remove an asynchronous command

opal.commands()

List the asynchronous commands

opal.commands_rm()

Remove all asynchronous commands

opal.datasource()

Get a datasource

opal.datasources()

Get datasources

opal.delete()

Generic REST resource deletion.

opal.execute()

Execute a R script

opal.execute.source()

Execute a R file script

opal.file()

Get file content

opal.file_cp()

Copy a file

opal.file_download()

Download a file

opal.file_ls()

List content of a folder

opal.file_mkdir()

Make a folder

opal.file_mkdir_tmp()

Make a temporary folder

opal.file_mv()

Move and/or rename a file

opal.file_read()

Read a file

opal.file_rm()

Remove a file

opal.file_unzip()

Unzip a zip archive file

opal.file_upload()

Upload a file or a folder

opal.file_write()

Write a file

opal.get()

Generic REST resource getter.

opal.load_package()

Load package

opal.login()

Opal login

opal.logout()

Logout from Opal(s)

opal.post()

Generic REST resource creation.

opal.profiles()

List R profiles

opal.project()

Get a project

opal.project_backup()

Backup a project

opal.project_command()

Get project task

opal.project_create()

Create a project

opal.project_delete()

Delete a project

opal.project_exists()

Check a project exists

opal.project_perm()

Get the permissions on a project

opal.project_perm_add()

Add or update a permission on a project

opal.project_perm_delete()

Delete a permission from a project

opal.project_restore()

Restore a project

opal.projects()

Get projects

opal.projects_databases()

Get projects databases

opal.put()

Generic REST resource update.

opal.report()

Opal report

opal.resource()

Get a resource reference of a project

opal.resource_create()

Create a resource reference in a project

opal.resource_delete()

Delete a resource reference

opal.resource_exists()

Check a resource reference exists

opal.resource_extension_create()

Create an extended resource reference in a project

opal.resource_get()

Get the resource object of a project

opal.resource_perm()

Get the permissions on a resource

opal.resource_perm_add()

Add or update a permission on a resource

opal.resource_perm_delete()

Delete a permission from a resource

opal.resources()

Get the resource references of a project

opal.resources_perm()

Get the permissions on any resource

opal.resources_perm_add()

Add or update a permission on any resource

opal.resources_perm_delete()

Delete a permission from any resource

opal.rm()

Remove a R symbol (deprecated)

opal.sql()

Execute a SQL query on tables

opal.sql_history()

SQL query execution history

opal.symbol_import()

Import a tibble

opal.symbol_rm()

Remove a R symbol

opal.symbol_save()

Save a tibble

opal.symbols()

List R symbols

opal.table()

Get a table of a datasource

opal.table_create()

Create a Opal table or view

opal.table_delete()

Delete a Opal table

opal.table_dictionary_get()

Get the dictionary of a Opal table

opal.table_dictionary_update()

Update the dictionary of a Opal table

opal.table_exists()

Check a Opal table exists

opal.table_export()

Export a table as a file

opal.table_get()

Get a Opal table as a tibble

opal.table_import()

Import a file as table

opal.table_perm()

Get the permissions on a table

opal.table_perm_add()

Add or update a permission on a table

opal.table_perm_delete()

Delete a permission from a table

opal.table_save()

Save a local tibble as a Opal table

opal.table_truncate()

Truncate a Opal table

opal.tables()

Get tables of a datasource

opal.tables_perm()

Get the permissions on any table of a project

opal.tables_perm_add()

Add or update a permission on any table of a project

opal.tables_perm_delete()

Delete a permission from any table of a project

opal.task()

Get a task

opal.task_cancel()

Cancel a task

opal.task_wait()

Wait for a task to complete.

opal.tasks()

Get the tasks

opal.taxonomies()

Get taxonomies

opal.taxonomy()

Get a taxonomy

opal.taxonomy_delete()

Delete a taxonomy

opal.taxonomy_download()

Download a taxonomy file

opal.taxonomy_upload()

Upload a taxonomy file

opal.terms()

Get the terms of a vocabulary

opal.token()

Get a personal access token

opal.token_datashield_create()

Create a personal access token for Datashield usage

opal.token_delete()

Delete a personal access token

opal.token_r_create()

Create a personal access token for R usage

opal.token_sql_create()

Create a personal access token for SQL usage

opal.tokens()

Get the personal access tokens

opal.unload_package()

Unload package

opal.valueset()

Get the values of an entity

opal.variable()

Get a variable of a table

opal.variables()

Get variables of a table

opal.version_compare()

Compare

opal.vocabularies()

Get the vocabularies of a taxonomy

opal.vocabulary()

Get a taxonomy vocabulary

opal.workspace_rm()

Remove a R workspace from a opal.

opal.workspace_save()

Save the current session in a opal R workspace.

opal.workspaces()

Get the R workspaces from a opal.