Package index • opalr

All functions

dictionary.annotate(): Set variable annotation with a taxonomy term

dictionary.annotate.harmo_status(): Set variable annotation with Harmonization Status term

dictionary.annotations(): List the annotations

dictionary.apply(): Apply the dictionary to a tibble

dictionary.inspect(): Inspect the dictionary of a tibble

dsadmin.activity(): Get DataSHIELD activity

dsadmin.activity_summary(): Get DataSHIELD activity summary

dsadmin.get_method(): Get a DataSHIELD method

dsadmin.get_methods(): Get DataSHIELD methods

dsadmin.get_options(): Get the DataSHIELD options

dsadmin.install_github_package(): Install a DataSHIELD package from GitHub

dsadmin.install_local_package(): Install a DataSHIELD package from a local archive file

dsadmin.install_package(): Install a DataSHIELD package

dsadmin.installed_package(): Check DataSHIELD package

dsadmin.log(): Get DataSHIELD logs

dsadmin.package_description(): Get DataSHIELD package description

dsadmin.package_descriptions(): Get DataSHIELD package descriptions

dsadmin.perm(): Get the DataSHIELD permissions

dsadmin.perm_add(): Add or update a DataSHIELD permission

dsadmin.perm_delete(): Delete a DataSHIELD permission

dsadmin.profile(): Get a DataSHIELD profile

dsadmin.profile_access(): Restrict or open access to a DataSHIELD profile

dsadmin.profile_create(): Create a DataSHIELD profile

dsadmin.profile_delete(): Delete a DataSHIELD profile

dsadmin.profile_enable(): Enable or disable a DataSHIELD profile

dsadmin.profile_exists(): Check a DataSHIELD profile exists

dsadmin.profile_init(): Initialize a DataSHIELD profile

dsadmin.profile_perm(): Get the permissions of a DataSHIELD profile

dsadmin.profile_perm_add(): Add or update a permission on a DataSHIELD profile

dsadmin.profile_perm_delete(): Delete a permission from a DataSHIELD profile

dsadmin.profile_rparser(): Set or remove the R parser version of a DataSHIELD profile

dsadmin.profiles(): Get DataSHIELD profiles

dsadmin.publish_package(): Publish DataSHIELD package settings

dsadmin.remove_package(): Remove DataSHIELD package

dsadmin.rm_method(): Remove DataSHIELD method

dsadmin.rm_methods(): Remove DataSHIELD methods.

dsadmin.rm_option(): Remove a DataSHIELD option

dsadmin.rm_options(): Remove all DataSHIELD options

dsadmin.rm_package_methods(): Remove DataSHIELD package methods

dsadmin.set_method(): Set DataSHIELD method

dsadmin.set_option(): Set DataSHIELD option

dsadmin.set_package_methods(): Set DataSHIELD package methods

dsadmin.unpublish_package(): Unpublish DataSHIELD package settings

oadmin.activity(): Get R activity

oadmin.activity_summary(): Get R activity summary

oadmin.install_bioconductor_package(): Install a package from Bioconductor

oadmin.install_cran_package(): Install a package from CRAN

oadmin.install_devtools(): Install devtools package

oadmin.install_github_package(): Install a package from GitHub

oadmin.install_local_package(): Install a package from a local archive file

oadmin.install_package(): Install CRAN package

oadmin.installed_devtools(): Check devtools package

oadmin.installed_package(): Check package is installed

oadmin.installed_packages(): List installed packages

oadmin.log(): Get Opal main logs

oadmin.log_rest(): Get Opal REST API logs

oadmin.log_sql(): Get Opal SQL API logs

oadmin.package_description(): Get package description

oadmin.perm(): Get the R permissions (deprecated)

oadmin.perm_add(): Add or update a R permission (deprecated)

oadmin.perm_delete(): Delete a R permission (deprecated)

oadmin.r_perm(): Get the R permissions

oadmin.r_perm_add(): Add or update a R permission

oadmin.r_perm_delete(): Delete a R permission

oadmin.remove_package(): Remove package

oadmin.system_metrics(): Get system metrics

oadmin.system_perm(): Get the System permissions

oadmin.system_perm_add(): Add or update a System permission

oadmin.system_perm_delete(): Delete a System permission

oadmin.user_add(): Add a user

oadmin.user_delete(): Delete a user

oadmin.user_enable(): Enable a user

oadmin.user_exists(): Check user exists

oadmin.user_profile_delete(): Delete a user profile

oadmin.user_profiles(): Get user profiles

oadmin.user_reset_password(): Reset user password

oadmin.users(): Get the users

opal.annotate(): Apply the annotations to a Opal table

opal.annotations(): Get the annotations of a Opal table

opal.as_md_table(): Array to Markdown

opal.assign(): Data or expression assignment

opal.assign.data(): Data assignment

opal.assign.resource(): Resource assignment

opal.assign.script(): R script assignment

opal.assign.table(): Data assignment to a data.frame

opal.assign.table.tibble(): Data assignment to a tibble

opal.attribute_values(): Get a vector of attribute values

opal.command(): Get an asynchronous command

opal.command_result(): Get result of an asynchronous command

opal.command_rm(): Remove an asynchronous command

opal.commands(): List the asynchronous commands

opal.commands_rm(): Remove all asynchronous commands

opal.datasource(): Get a datasource

opal.datasources(): Get datasources

opal.delete(): Generic REST resource deletion.

opal.execute(): Execute a R script

opal.execute.source(): Execute a R file script

opal.file(): Get file content

opal.file_cp(): Copy a file

opal.file_download(): Download a file

opal.file_ls(): List content of a folder

opal.file_mkdir(): Make a folder

opal.file_mkdir_tmp(): Make a temporary folder

opal.file_mv(): Move and/or rename a file

opal.file_read(): Read a file

opal.file_rm(): Remove a file

opal.file_unzip(): Unzip a zip archive file

opal.file_upload(): Upload a file or a folder

opal.file_write(): Write a file

opal.get(): Generic REST resource getter.

opal.load_package(): Load package

opal.login(): Opal login

opal.logout(): Logout from Opal(s)

opal.perms(): Get the permissions of a subject

opal.post(): Generic REST resource creation.

opal.profiles(): List R profiles

opal.project(): Get a project

opal.project_backup(): Backup a project

opal.project_command(): Get project task

opal.project_create(): Create a project

opal.project_delete(): Delete a project

opal.project_exists(): Check a project exists

opal.project_perm(): Get the permissions on a project

opal.project_perm_add(): Add or update a permission on a project

opal.project_perm_delete(): Delete a permission from a project

opal.project_restore(): Restore a project

opal.projects(): Get projects

opal.projects_databases(): Get projects databases

opal.put(): Generic REST resource update.

opal.report(): Opal report

opal.resource(): Get a resource reference of a project

opal.resource_create(): Create a resource reference in a project

opal.resource_delete(): Delete a resource reference

opal.resource_exists(): Check a resource reference exists

opal.resource_extension_create(): Create an extended resource reference in a project

opal.resource_get(): Get the resource object of a project

opal.resource_perm(): Get the permissions on a resource

opal.resource_perm_add(): Add or update a permission on a resource

opal.resource_perm_delete(): Delete a permission from a resource

opal.resource_view_create(): Create an Opal view over a resource reference

opal.resource_view_reconnect(): Reconnect an Opal view to its underlying resource

opal.resources(): Get the resource references of a project

opal.resources_perm(): Get the permissions on any resource

opal.resources_perm_add(): Add or update a permission on any resource

opal.resources_perm_delete(): Delete a permission from any resource

opal.rm(): Remove a R symbol (deprecated)

opal.session(): Create the R session

opal.session_delete(): Delete the R session

opal.session_events(): Get the events associated to the R session

opal.session_exists(): Check if the R session exists

opal.session_get(): Get the R session

opal.session_running(): Check if the R session is running

opal.sql(): Execute a SQL query on tables

opal.sql_history(): SQL query execution history

opal.symbol_import(): Import a tibble

opal.symbol_rm(): Remove a R symbol

opal.symbol_save(): Save a tibble

opal.symbols(): List R symbols

opal.table(): Get a table of a datasource

opal.table_create(): Create an Opal table or view

opal.table_delete(): Delete a Opal table

opal.table_dictionary_get(): Get the dictionary of a Opal table

opal.table_dictionary_update(): Update the dictionary of a Opal table

opal.table_exists(): Check a Opal table exists

opal.table_export(): Export a table as a file

opal.table_get(): Get a Opal table as a tibble

opal.table_import(): Import a file as table

opal.table_perm(): Get the permissions on a table

opal.table_perm_add(): Add or update a permission on a table

opal.table_perm_delete(): Delete a permission from a table

opal.table_save(): Save a local tibble as a Opal table

opal.table_truncate(): Truncate a Opal table

opal.table_view_create(): Create an Opal view over tables

opal.table_view_update(): Update the table references and the entity filter of an Opal view

opal.tables(): Get tables of a datasource

opal.tables_perm(): Get the permissions on any table of a project

opal.tables_perm_add(): Add or update a permission on any table of a project

opal.tables_perm_delete(): Delete a permission from any table of a project

opal.task(): Get a task

opal.task_cancel(): Cancel a task

opal.task_wait(): Wait for a task to complete.

opal.tasks(): Get the tasks

opal.taxonomies(): Get taxonomies

opal.taxonomy(): Get a taxonomy

opal.taxonomy_delete(): Delete a taxonomy

opal.taxonomy_download(): Download a taxonomy file

opal.taxonomy_upload(): Upload a taxonomy file

opal.terms(): Get the terms of a vocabulary

opal.token(): Get a personal access token

opal.token_datashield_create(): Create a personal access token for Datashield usage

opal.token_delete(): Delete a personal access token

opal.token_r_create(): Create a personal access token for R usage

opal.token_renew(): Renew an inactive personal access token

opal.token_sql_create(): Create a personal access token for SQL usage

opal.tokens(): Get the personal access tokens

opal.unload_package(): Unload package

opal.valueset(): Get the values of an entity

opal.variable(): Get a variable of a table

opal.variable_summary(): Get summary statistics of a variable of a table

opal.variables(): Get variables of a table

opal.version_compare(): Compare

opal.vocabularies(): Get the vocabularies of a taxonomy

opal.vocabulary(): Get a taxonomy vocabulary

opal.workspace_restore(): Restore a R workspace from a opal.

opal.workspace_rm(): Remove a R workspace from a opal.

opal.workspace_save(): Save the current session in a opal R workspace.

opal.workspaces(): Get the R workspaces from a opal.