List the annotations — dictionary.annotations • opalr

List the annotations of each of the variables.

dictionary.annotations(
  tibble,
  variables = NULL,
  taxonomy = NULL,
  vocabulary = NULL
)

Arguments

tibble: Tibble to be annotated
variables: A character vector of variable names to be inspected. If NULL or empty, all the columns of the tibble will be inspected.
taxonomy: Filter by taxonomy name(s) (if provided).
vocabulary: Filter by vocabulary name(s) (if provided).

Value

A data frame in long format (one row per annotation).

Examples

if (FALSE) {
o <- opal.login('administrator','password', url='https://opal-demo.obiba.org')
cqx <- opal.table_get(o, "CPTP", "Cag_coreqx")
annot <- dictionary.annotations(cqx, taxonomy = "Mlstr_harmo", vocabulary = "status")
opal.logout(o)
}