Download a taxonomy file — opal.taxonomy_download • opalr

Download a taxonomy stored in a file in YAML format.

Usage

opal.taxonomy_download(opal, taxonomy, destination = NULL)

Arguments

opal: Opal object.
taxonomy: Name of the taxonomy.
destination: Path to the taxonomy YAML file. If not provided, the downloaded file will have the taxonomy name with the '.yml' extension and will be located in the working directory.

See also

Other taxonomy functions: opal.taxonomies(), opal.taxonomy(), opal.taxonomy_delete(), opal.taxonomy_upload(), opal.terms(), opal.vocabularies(), opal.vocabulary()

Examples

if (FALSE) { # \dontrun{
o <- opal.login('administrator','password', url='https://opal-demo.obiba.org')
opal.taxonomy_download(o, 'Mlstr_area', '~/some/dir/Mlstr_area.yml')
opal.logout(o)
} # }