Infrastructure

Our development workflow follows agile principles with continuous integration. To keep the maintenance of the development infrastructure low, we rely on software-as-a-service offers.

Issue tracking

Each application or library has its issue tracker in its GitHub repository: Opal, Mica, Agate, Rock, Amber…

Continuous integration

GitHub Actions builds and tests each commit, pull request and tag.

Repositories

The Maven, Debian and RPM package repositories are hosted on JFrog Artifactory. Installation instructions:

• Debian package repository
• RPM package repository

Debian, RPM and zip packages can also be downloaded from the GitHub releases pages: Opal, Mica, Agate, Rock…

Other distribution channels:

• R packages: on CRAN; DataSHIELD packages also on the OBiBa CRAN repository.
• Python packages: on PyPI, e.g. obiba-opal.
• Plugins: the plugins index and service plugin interfaces (SPI) are in the plugins repository.
• Docker images: on Docker Hub.

Documentation

The online documentation is hosted by Read the Docs: Opal, Mica, Agate, Rock, Amber.