Open Source Software for BioBanks


Software solutions for epidemiological data management and analysis

Our Applications

Collect with Onyx

Onyx is a comprehensive web application used to manage subject interviews and collect data in clinics or assessment centres. Using Onyx, studies can design and administrate advanced questionnaires and automate data capture directly from electronic medical instruments avoiding error prone manual data acquisition.

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Store with Opal

Opal is the OBiBa’s core database application for epidemiological studies. It is used to build study's central data repositories that integrate under a uniform interface data collected from multiple sources (including Onyx). Using Opal, studies can import, validate, derive, query, report, analyse and export data.

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Analyze with R and DataSHIELD

DataSHIELD enables advanced statistical analysis across a network of Opal databases without the need of pooling and accessing individual-level data. This is a powerful tool for studies that can’t share data for common ethico-legal reasons but still want to co-analyse in-depth their data in an extensive way.

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Publish with Mica

Mica is a web application used to create web data portals for epidemiological studies or consortia. Mica includes modules to create study catalogs, searchable variable dictionaries, online data access request forms and to query remotely datasets stored in Opal databases.

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What is OBiBa?

About

OBiBa is an international project committed to build open source software for epidemiological studies and biobanks. OBiBa software is developed in close partnership with large-scale studies and supports the entire data management lifecycle including data collection, integration, harmonization, sharing, and analysis.

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An integrated suite of applications

OBiBa applications are fully interoperable and offer a comprehensive and integrated software solution for both individual studies and networks of studies that aims to build a federated database infrastructure.

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Latest News

A complete list of releases and events can be found here.

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